BtaALTA0001325-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1801192-1802007:-
Coord C1 exon
chr25:1801835-1802007
Coord A exon
chr25:1801317-1801320
Coord C2 exon
chr25:1801192-1801316
Length
4 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCTGTTTTCCAAACAACTAGACA
3' ss Score
2.5
Exon sequences
Seq C1 exon
ACATCCAGTACCAAGAGAACTTCTACGCGTGGAGCACCCCGGGGGTCGGCAGGTTCGTGACCTCCATGGCCGCCTCAGGGTTTGCCTACCTCACCCTGCTCTTCCTCGTGGAGGCCGACCTGCTATGGAGGCTGAAGACCTGCCTGTGTGCCTTCCAGAGGAGGCGGGCACTG
Seq A exon
ACAG
Seq C2 exon
AAGTGTACACCCGGACGGCGGCGCTCCCTGAAGACCAGGACGTGATGGACGAAAGGAACCGCATCCTGTCCCCCAGCCTGGACTCCCTGCTGGACACACCTCTGATCATCAAGGAGCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-28-31,28-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.7=60.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATGGAGGCTGAAGACCT
R:
TCCATCACGTCCTGGTCTTCA
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development