BtaALTA0001803-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45236680-45237160:+
Coord C1 exon
chr29:45236680-45236765
Coord A exon
chr29:45237068-45237071
Coord C2 exon
chr29:45237072-45237160
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTGCCCATTCCCACCAAAGGCA
3' ss Score
5.93
Exon sequences
Seq C1 exon
ACATTGTGAACACCCCAAAGCCTGATGAGAAGGCCATCATGACCTATGTCTCCTGCTTCTACCACGCCTTTGCCGGGGCGGAGCAG
Seq A exon
GCAG
Seq C2 exon
AGACAGCTGCCAACAGGATCTGCAAAGTGCTGGCCGTGAACCAGGAGAACGAGAAGCTGATGGAGGAATATGAAAAGCTGGCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244-11-11,11-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACACCCCAAAGCCTGAT
R:
CAGATCCTGTTGGCAGCTGTC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development