DreALTA0003922-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000013755 | actn3a
Description
actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
Coordinates
chr21:27363355-27363644:+
Coord C1 exon
chr21:27363355-27363440
Coord A exon
NA
Coord C2 exon
chr21:27363552-27363644
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCAGTCACACTGTCCTCCAGGCT
3' ss Score
6.02
Exon sequences
Seq C1 exon
ACATTGTGAACACTCCAAAACCTGATGAGAAGGCCATCATGACCTATGTGTCATGTTTCTACCATGCTTTTGCTGGTGCAGAGCAG
Seq A exon
NA
Seq C2 exon
GCTGAGACAGCAGCTAACAGGATCTGCAAAGTCCTGGCAGTGAACCAGGAAAATGAGAAGCTGATGGAAGAATACGAGAAACTGGCCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013755-12-11,12-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAACCTGATGAGAAGGCCA
R:
TTCACTGCCAGGACTTTGCAG
Band lengths:
116-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]