BtaALTA0001963-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20193209-20194217:-
Coord C1 exon
chr3:20193536-20194217
Coord A exon
chr3:20193312-20193340
Coord C2 exon
chr3:20193209-20193311
Length
29 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ACCCCCATTTTCCTCCCCAGCTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
AAACAGAACTGTCTCCCACAGAACCTTCTGCCCACACCCTCCCACCCCAAGCAGAACCCCCAAGCCCTGAAGCTGCTCAGACAGCCGTGCCCTCTAGAGCCAGGCCTGCCCCCACAGGGCCACACCCCAGAGCCCAGGCCTCTGGCACAGAGTCCTCCTTTCATTCCCCATCCCCGGGAGAAGGTAGCTCCTTTCACCTGTCCCTTCAGCCAAGAAGGCCAAGTTCCCAGGGTTGGGCCAGCCCCAGGCTGGCAGACAGACACCCTAATCCTTTCCTTTCTGTGCCTTGGGGCCGAGGCCAGCAGAGCCAGGAGCAGTGGAGACCTGGGGGGAATCTCCACGGGTCCCTCACGGAGTCTGCCCCTCCCCAGCCAGATGGCTGGCTGCCTCTGCTGAGCTCTGGCCCCCACTCCAGCCCACTCTGGAGCCTCTTTGCTCCCAGTAGCCCTGTCCCAAGATGTTCTGGGGAGAGTGAACAGCTGAGAGCCTGCAGCCAAGCG
Seq A exon
CTTTGACTCCTCTGTATCCCCCACCTCAG
Seq C2 exon
CCCTGCCCCGCTGAGCAGCCAGACCCCCGGGCCCTGCAGTGTGCAGCCTTTGACTCCCAGGAGTTCATGGGCCAACTGTACCAGTGGGAGCCCTTCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGAGTGAACAGCTGAGA
R:
CAGTTGGCCCATGAACTCCTG
Band lengths:
114-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development