BtaINT0014395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20193209-20194217:-
Coord C1 exon
chr3:20193536-20194217
Coord A exon
chr3:20193312-20193535
Coord C2 exon
chr3:20193209-20193311
Length
224 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTCTGTATCCCCCACCTCAGCCC
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTCCCGGGTTCGAGACCCCATCAAGCCAGGAATGTTTGGCTATGGGAGGGTGCCCTTTGCTTTGCCGCTCCATCGGAACCGCAGGCATCCCCGAAGACCACCCAGATCTGAACTCTCTCAAACCTCAGATCTTCCATCCCTGACTCCGAGAACAGAGCCATCTTCCTCAAACCACACCCAGAAAACAGAACTGTCTCCCACAGAACCTTCTGCCCACACCCTCCCACCCCAAGCAGAACCCCCAAGCCCTGAAGCTGCTCAGACAGCCGTGCCCTCTAGAGCCAGGCCTGCCCCCACAGGGCCACACCCCAGAGCCCAGGCCTCTGGCACAGAGTCCTCCTTTCATTCCCCATCCCCGGGAGAAGGTAGCTCCTTTCACCTGTCCCTTCAGCCAAGAAGGCCAAGTTCCCAGGGTTGGGCCAGCCCCAGGCTGGCAGACAGACACCCTAATCCTTTCCTTTCTGTGCCTTGGGGCCGAGGCCAGCAGAGCCAGGAGCAGTGGAGACCTGGGGGGAATCTCCACGGGTCCCTCACGGAGTCTGCCCCTCCCCAGCCAGATGGCTGGCTGCCTCTGCTGAGCTCTGGCCCCCACTCCAGCCCACTCTGGAGCCTCTTTGCTCCCAGTAGCCCTGTCCCAAGATGTTCTGGGGAGAGTGAACAGCTGAGAGCCTGCAGCCAAGCG
Seq A exon
GTGAGTTCCTTCTTTGACCCCTCCCAGACTTCCAATTCTGCTTCCCTGATTAGCCCGTCAGATCTGGACCTGAGGGAGAAGGGCCTTGGCATCCGACCTCTTCAGGGCAGGGGGCTTGGAGCTCTTCCCTAGACCTGACCTTCCTCTCTACCCCCCAAATCCAGCCCTGATCCACACCCCCATTTTCCTCCCCAGCTTTGACTCCTCTGTATCCCCCACCTCAG
Seq C2 exon
CCCTGCCCCGCTGAGCAGCCAGACCCCCGGGCCCTGCAGTGTGCAGCCTTTGACTCCCAGGAGTTCATGGGCCAACTGTACCAGTGGGAGCCCTTCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604:ENSBTAT00000004686:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTTCTGTGCCTTGGGG
R:
CAGTTGGCCCATGAACTCCTG
Band lengths:
307-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]