BtaALTA0002341-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017411 | AK5
Description
Bos taurus adenylate kinase 5 (AK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001083757]
Coordinates
chr3:67603065-67609261:-
Coord C1 exon
chr3:67609075-67609261
Coord A exon
NA
Coord C2 exon
chr3:67603065-67603160
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
AATCCATCAATTCTCCATAGAAA
3' ss Score
6.17
Exon sequences
Seq C1 exon
AGCCTTTTGAATGGACTGATGTGTTCAAAGCCTGAAGACCCAGTAGAGTACTTGGAAAGTTGTTTACAGAAAGTAAAGGAATTAGGGGGATGTGACAAGGTGAAATGGGATACATTTGTAAGCCAGGAGAAGAAGACTTTACCTCCACTCAATGGAGGACAGTCACGGAGATCCTTCCTAAGAAATG
Seq A exon
NA
Seq C2 exon
AAAGTGACACGGACCTTTCTGAGACTGCAGAGCTGATTGAGGAGTATGAGGTCTTTGATCCTACTAGACCTCGACCAAAAATCATTCTTGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017411-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAAGACCCAGTAGAGT
R:
TCTCAGAAAGGTCCGTGTCACT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development