BtaALTA0002341-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017411 | AK5
Description
Bos taurus adenylate kinase 5 (AK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001083757]
Coordinates
chr3:67603065-67609261:-
Coord C1 exon
chr3:67609075-67609261
Coord A exon
chr3:67603161-67603232
Coord C2 exon
chr3:67603065-67603160
Length
72 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTTATCTTACTCTTTTGCAGTAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGCCTTTTGAATGGACTGATGTGTTCAAAGCCTGAAGACCCAGTAGAGTACTTGGAAAGTTGTTTACAGAAAGTAAAGGAATTAGGGGGATGTGACAAGGTGAAATGGGATACATTTGTAAGCCAGGAGAAGAAGACTTTACCTCCACTCAATGGAGGACAGTCACGGAGATCCTTCCTAAGAAATG
Seq A exon
TAATGCCTGAAAATTCAAACTTTCCTTATCGGCGGTATGATCGGCTCCCTCCAATCCATCAATTCTCCATAG
Seq C2 exon
AAAGTGACACGGACCTTTCTGAGACTGCAGAGCTGATTGAGGAGTATGAGGTCTTTGATCCTACTAGACCTCGACCAAAAATCATTCTTGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017411-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAAGACCCAGTAGAGT
R:
TCTCAGAAAGGTCCGTGTCACT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development