GgaALTA1003991-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009005 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr8:18063785-18065156:-
Coord C1 exon
chr8:18064970-18065156
Coord A exon
chr8:18063891-18063952
Coord C2 exon
chr8:18063785-18063890
Length
62 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TTTATCTTACTATTTTACAGTGA
3' ss Score
8.01
Exon sequences
Seq C1 exon
AGTCTGTTGAATGGATTAATGTGTTACAAACCTGATGACCCTATTGAATATCTGGAAAGCTGCTTGCAGAAGGTGAAAGAGCTTGGAGGATCAGAGAAAGTGAAATGGGACACTTTTGTCAGCCCAGAAAAGAAGGCTCTGCCTCCACTCAATGGAGGACAATCGAGGAGATCTTTTTTCAGAAATG
Seq A exon
TGATGCCTGATAATTCCAACTTCCCTTACCGACGGTATGACCGACTCCCTCCAATCCAACAG
Seq C2 exon
TTTTCTATAGAAAGTGACACCGATCTTTCTGAAACTGCTGAGCTAATTGAGGAATATGATGTGTTTGATCCTGCAAGACCTCGACCAAAAATTATCCTTGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCCTCCACTCAATG
R:
TTTTGGTCGAGGTCTTGCAGG
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]