HsaALTA0000318-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:365]
Coordinates
chr1:77752626-77759645:+
Coord C1 exon
chr1:77752626-77752812
Coord A exon
chr1:77759478-77759549
Coord C2 exon
chr1:77759550-77759645
Length
72 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTTATCTTACTCTTTTGCAGTAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGCCTTTTGAATGGACTGATGTGTTCTAAGCCCGAAGATCCAGTAGAATACTTGGAAAGTTGTTTACAAAAAGTAAAGGAACTGGGTGGCTGTGACAAGGTGAAATGGGATACATTTGTAAGCCAGGAAAAGAAGACCTTACCTCCACTAAATGGAGGACAGTCACGGAGATCCTTTCTAAGAAATG
Seq A exon
TAATGCCTGAAAACTCAAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCATCAATTCTCCATAG
Seq C2 exon
AAAGTGACACGGATCTCTCTGAGACTGCAGAGTTGATTGAGGAGTATGAGGTTTTTGATCCTACCAGACCTCGACCAAAAATCATTCTTGTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF051868=Dpy-30=PD(60.5=41.3)
A:
NA
C2:
PF0040617=ADK=PU(1.3=3.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTGTGACAAGGTGAAA
R:
GGTCGAGGTCTGGTAGGATCA
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)