HsaALTA0000318-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr1:77286941-77293960:+
Coord C1 exon
chr1:77286941-77287127
Coord A exon
chr1:77293793-77293868
Coord C2 exon
chr1:77293869-77293960
Length
76 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTTATCTTACTCTTTTGCAGTAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGCCTTTTGAATGGACTGATGTGTTCTAAGCCCGAAGATCCAGTAGAATACTTGGAAAGTTGTTTACAAAAAGTAAAGGAACTGGGTGGCTGTGACAAGGTGAAATGGGATACATTTGTAAGCCAGGAAAAGAAGACCTTACCTCCACTAAATGGAGGACAGTCACGGAGATCCTTTCTAAGAAATG
Seq A exon
TAATGCCTGAAAACTCAAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCATCAATTCTCCATAGAAAG
Seq C2 exon
TGACACGGATCTCTCTGAGACTGCAGAGTTGATTGAGGAGTATGAGGTTTTTGATCCTACCAGACCTCGACCAAAAATCATTCTTGTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-3-8,3-7,3-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=3.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTGTGACAAGGTGAAA
R:
GGTCGAGGTCTGGTAGGATCA
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains