BtaALTA0002677-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15855802-15858878:-
Coord C1 exon
chr28:15858735-15858878
Coord A exon
NA
Coord C2 exon
chr28:15855802-15856110
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
AAATGTACTGTCTTCCATAGGTT
3' ss Score
9.85
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTGACAAAAATTAATCGAATAGATATAGTGACTCTGCTAGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGTTTTGCAGATGAGAACAATGTTTTCCATGACCCCGTGGATG
Seq A exon
NA
Seq C2 exon
GTTATCCTTCCCTTCAAGTGGAACTGGAAACTCCCACAGGGTTGCACTACACACCTCCCACCCCTTTCCAGCAAGATGATTATTTTAGTGATCTCTCTAGCATAGAATCTCCCCTTAGAACCCCCAGTAGACTGAGTGATGGGGTAGTGCCTTCCCAGGGAAACATAGAGCATTCAGCAGATGGACCTCCAGTTGTAACTGCAGAAGACACGTCCTTAGAAGACAGCAAACTTGAAGACTCAATGCCTTTAACAGAAATACCTGAAGCAGTGGATGTAGATGAGAGCCAGTTGGAGAATATATGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-63-71,63-70-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCACCAGAAGTTTTGCA
R:
GAGGTGTGTAGTGCAACCCTG
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development