HsaALTA0000435-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60059940-60063254:-
Coord C1 exon
chr10:60063111-60063254
Coord A exon
chr10:60060007-60060029
Coord C2 exon
chr10:60059940-60060006
Length
23 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
TTCTAATTCATTCCAGTCAGTCC
3' ss Score
-0.23
Exon sequences
Seq C1 exon
CTGATGCCTTAACTTCGGTCTTGACAAAAATTAATCGAATAGATATAGTGACACTGCTAGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGTTTTGCAGATGAGAACAATGTTTTCCATGACCCTGTTGATG
Seq A exon
TCCAAATGTACTGTCTTCCATAG
Seq C2 exon
GTTATCCTTCCCTTCAAGTGGAACTGGAAACCCCCACAGGGTTGCACTACACACCACCTACCCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-125-120,125-119,125-118-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.809
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCACCAGAAGTTTTGCA
R:
GTGTGTAGTGCAACCCTGTGG
Band lengths:
109-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development