BtaALTA0003898-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005735 | ATP5G2
Description
Bos taurus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) (ATP5G2), mRNA. [Source:RefSeq mRNA;Acc:NM_176613]
Coordinates
chr5:26538069-26539249:-
Coord C1 exon
chr5:26539186-26539249
Coord A exon
NA
Coord C2 exon
chr5:26538069-26538111
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TATTTTTCCGGCTAGATCAGGAG
3' ss Score
-0.95
Exon sequences
Seq C1 exon
TGCCGTAGCCCTTCATCCCCTGAAAATGTACACTTGCGCCAAGTTCGTCTCCACCCCCTCCTTG
Seq A exon
NA
Seq C2 exon
GAGAACCTCTACAGTATTGAGCCGATCACTGTCTGCAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005735-2-2,2-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGCCCTTCATCCCCTGAA
R:
GCAGACAGTGATCGGCTCAAT
Band lengths:
97-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development