RnoALTA0005176-1/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015320 | Atp5mc2
Description
ATP synthase membrane subunit c locus 2 [Source:RGD Symbol;Acc:620051]
Coordinates
chr7:144267176-144269486:-
Coord C1 exon
chr7:144269421-144269486
Coord A exon
NA
Coord C2 exon
chr7:144267176-144267248
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTCATTCCTCTAGATCAGGAG
3' ss Score
2.27
Exon sequences
Seq C1 exon
TCTGCCTTTGCCCCTCACCCCTGAAAAATGTATGCCTGCTCCAAGTTCGTCTCTACCCGCTCCCTG
Seq A exon
NA
Seq C2 exon
GAGCACCTCTCAGCTGCTGAGCCGTCCGCTCTCTGCAGTGGAGTTAAAGCGACCACAGATGCCCACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015320-14-11,14-10,14-9,14-8,14-7,14-6,14-5-1/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCCTGCTCCAAGTTCGT
R:
CATCTGTGGGCATCTGTGGTC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]