BtaALTA0004239-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57157894-57158891:+
Coord C1 exon
chr5:57157894-57158040
Coord A exon
NA
Coord C2 exon
chr5:57158668-57158891
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CTTTTTCTTATCCTCAGCAGGTA
3' ss Score
7.53
Exon sequences
Seq C1 exon
ACCTGTCTAGTCTGCCGGAAGGGTGACAACGATGAGTTTCTTCTACTTTGTGATGGGTGTGACCGTGGCTGCCATATTTACTGCCTTCGGCCCAAGATGGAGGCTGTCCCAGAAGGAGACTGGTTCTGTGCTGTCTGTCTGGCCCAG
Seq A exon
NA
Seq C2 exon
GTAGAAGGAGAATTGACTCAGAAATCTGGTTTCCCAAAACGAGGCCAGAAGCGGAAAAGCGGTTATGTGCTGACCTTCCCAGAGGGTGACAACCGCCGGCGCCGGCTGCTACCAAGGGGCCGAGAGAGCCCAGCAGTGCCCCGGTACTCAGAGGAAGGGCTGTCCCCCTCGAAGCGGCGGCGCGTCTCCATGCGGAACCATCACAGTGATCTCACATTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-39-45,39-44-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.408
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTGTGCTGTCTGTCTGG
R:
GGGAAGGTCAGCACATAACCG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development