Special

MmuALTA0002669-2/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127562555-127563297:+
Coord C1 exon
chr10:127562555-127562701
Coord A exon
chr10:127563077-127563158
Coord C2 exon
chr10:127563159-127563297
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTGGGCCTATCCTCAGCAGGTA
3' ss Score
5.51
Exon sequences
Seq C1 exon
ACCTGCCTGGTCTGCCGGAAGGGCGATAATGATGAGTTTCTCCTGCTGTGTGATGGGTGTGACCGAGGCTGCCACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTCTGTGCTGTCTGTCTGTCCCAG
Seq A exon
GTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCCAAAACGAGGTCAGAAGCGGAAAAGTAGTTTTCCACTGACCTTCCCAG
Seq C2 exon
AAGGTGACAGCCGGCGGCGGATGTTGTCAAGGAGCCGAGATAGTCCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCTCCCCCCAAAAGACGGCGACATTCGATGAGAAGTCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-42-49,42-48,42-47-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.573
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0062824=PHD=WD(100=100.0)

							
A:
NA

							
C2:
PF0043920=Bromodomain=PU(1.2=1.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000129803





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000044359
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:56993140-56993141 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:57158668-57158891 
ALTERNATIVE
BtaALTA0004239-1/2
(BAZ2A)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTCTCCTGCTGTGTGATGGGT

				
R: 
CGAGGCACTGCTGGACTATCT

				
Band lengths: 
168-250

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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