MmuALTA0002669-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127562555-127563297:+
Coord C1 exon
chr10:127562555-127562701
Coord A exon
chr10:127563074-127563158
Coord C2 exon
chr10:127563159-127563297
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCACCTGGGCCTATCCTCAGCAG
3' ss Score
3.85
Exon sequences
Seq C1 exon
ACCTGCCTGGTCTGCCGGAAGGGCGATAATGATGAGTTTCTCCTGCTGTGTGATGGGTGTGACCGAGGCTGCCACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTCTGTGCTGTCTGTCTGTCCCAG
Seq A exon
CAGGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCCAAAACGAGGTCAGAAGCGGAAAAGTAGTTTTCCACTGACCTTCCCAG
Seq C2 exon
AAGGTGACAGCCGGCGGCGGATGTTGTCAAGGAGCCGAGATAGTCCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCTCCCCCCAAAAGACGGCGACATTCGATGAGAAGTCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-42-49,42-48,42-47-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.573
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTGCTGTGTGATGGGT
R:
CGAGGCACTGCTGGACTATCT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: