BtaALTA0004602-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104860032-104862620:-
Coord C1 exon
chr11:104862492-104862620
Coord A exon
chr11:104860884-104860888
Coord C2 exon
chr11:104860032-104860883
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACCTGTGCGTCTCCCCCAGAGA
3' ss Score
9.19
Exon sequences
Seq C1 exon
CCACGAGCGGGAAGAAGCAGGCGGCCAAGTCGAAGGAGGAGCTGGCTCAGGAGAAGAAGAAGGAGCTGGAGAGGCGGCTGCAGGATGTCAGTGGGCAGCTGAGCAACAGCAAGAAGCCAGCCAAGAGAG
Seq A exon
AGAAG
Seq C2 exon
TCGGGCTCCACCGCGTCCGGGGGGCCCTCGCGGCTCAGCAGCAGCAGCTCCTCCGAGTCCGGCAGCAGCAGCACGAGCGGATCCAGCTCCGACAGCAGCGACTCCGAGTGAGCCCTGGACGCGCGCGGCTTGGGACGCAGCCGGTGGCCGCCGCCGCCGCGGGGACGCCGCGGCCTTCCCCCCGGCGGTTAATATACTCCTTTCGTTCCATGGCGTGCAGGCTCTCCTTTCACTTCAGTGTTATGGTATCTTCCAGTTCTGGCTTTAATAGGTCAACCAGGATCTTTCTGTGTGTGTCCATTAGACTTTGAGAAGCTGTGAATCGGCATAAGGTCTTTCCTCTGTAACTGAACTCAAGCCCCTTGGAGATGCCGGCTTCAGACGCTAACCTGGTAACTGTAGGAAACGTGTGAGGTGTGGTCTGAAGGTGCTTGCAGAGCCCCTTTCCTTACGCCCGACCTGGTCTGTAGCCCCAGCGAGAACGTCTCCCAAGGAAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-15-21,15-20,15-19-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF084185=Pol_alpha_B_N=FE(36.4=100)
A:
NA
C2:
PF084185=Pol_alpha_B_N=PD(31.4=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCCAGCCAAGAGAG
R:
GATCCGCTCGTGCTGCTG
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development