DreALTA0006226-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63732897-63739688:-
Coord C1 exon
chr5:63739399-63739688
Coord A exon
NA
Coord C2 exon
chr5:63732897-63732997
Length
0 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
TTCTTCCCTGTCGCCAGCAGAGA
3' ss Score
5.76
Exon sequences
Seq C1 exon
GCAAGCGAAAAAGGGTGGCAAACCTGGTGCAGCAAACTACGAGTCTGACGAGGAAGAGTCTCTTCCCATGTCTTACGACGAGAAGCGGCAGCTCAGCCTGGATATCAACCGATTGCCGGGTGAGAAACTGGGCCGCGTGGTCCACATCATCCAATCACGCGAGCCCTCGCTGCGAGACTCCAACCCAGACGAGATCGAGATCGACTTCGAAACACTCAAGCCTTCCACGCTGCGCGAGCTGGAGCGATACGTCAAGTCCTGTTTACAGAAAAAGCAGCGCAAACCTTTAC
Seq A exon
NA
Seq C2 exon
AGAAGGCGGGGTCAGCGCAGGGGGGCGGGGCATCCCGGTTGAGCGGCAGCAGCAGCTCTTCGGATTCGGGCAGCAGCAGCTCCAGCGGCTCCAGCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129-22-17,22-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF122803=BSMAP=PD(43.5=48.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAAAGCAGCGCAAACC
R:
CCGAATCCGAAGAGCTGCTG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]