DreEX0017304 @ danRer10
Exon Skipping
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63730352-63739688:-
Coord C1 exon
chr5:63739399-63739688
Coord A exon
chr5:63736216-63736341
Coord C2 exon
chr5:63730352-63732997
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGCTGTGTGTCTCCTGCAGCGG
3' ss Score
11.18
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GCAAGCGAAAAAGGGTGGCAAACCTGGTGCAGCAAACTACGAGTCTGACGAGGAAGAGTCTCTTCCCATGTCTTACGACGAGAAGCGGCAGCTCAGCCTGGATATCAACCGATTGCCGGGTGAGAAACTGGGCCGCGTGGTCCACATCATCCAATCACGCGAGCCCTCGCTGCGAGACTCCAACCCAGACGAGATCGAGATCGACTTCGAAACACTCAAGCCTTCCACGCTGCGCGAGCTGGAGCGATACGTCAAGTCCTGTTTACAGAAAAAGCAGCGCAAACCTTTAC
Seq A exon
CGGGCACTGGGAAAAAGAGTGCCAAGTCTAAAGAGGAACTGGTTCAGGAAAAGAAGAAAGAGTTAGAAAAGAGGCTACAGGACGTGAGCGGACAACTGAACAACAACAAGAAACCACCCAAAAAAG
Seq C2 exon
AGAAGGCGGGGTCAGCGCAGGGGGGCGGGGCATCCCGGTTGAGCGGCAGCAGCAGCTCTTCGGATTCGGGCAGCAGCAGCTCCAGCGGCTCCAGCTCCGAGAGCAGCGACTCAGACTGAACTCCAAATCCTTCAAGCTCCTCTGTTTTCTAACCAAGTAGTGTGTGTTGTCATGATAGTATCTCTCTGAAGGGGGCCGCTTTTACGAAGAGCTTTGCAGGACGGCAGAGGATATTTTAAACATAGTTTGTAGGACGGCTCAGATCAAGAGGAGAGCGGGAATAGTACGAGTTTTAAAGGTTCTCTCTGGCCCTCAAAGGGAAAAAAACGCCTGGTATCACCAGAGGATTAAAAAAAGACAAAAAAAAAAGATATTTTTTTGAAAATATGTCAGTTGTGGAAGTGAAACGGTTGTGCGTCTGTTCTTTCTTTTTATTTTCGGTTAGGTTGCTGCTCGTTAGATTCATACACGCGTTAGTGGGGAAAAACTGACAAATGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF122803=BSMAP=PD(43.5=48.5)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTCCAACCCAGACGAGA
R:
TGGAGTTCAGTCTGAGTCGCT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]