GgaEX1011180 @ galGal4
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:92855-93569:+
Coord C1 exon
chr16:92855-93165
Coord A exon
chr16:93243-93365
Coord C2 exon
chr16:93439-93569
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTGAACCTGAATTTCACAGCCA
3' ss Score
2.32
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATAGCGAGA
Seq A exon
CCATGAAGAAGCCGGTGGGGAAGACGAAAGAAGAACTGGCGCTGGAGAAGAAGCGGGAGCTGGAGAAGCGGCTGCAGGACGTCAGCGGGCAGCTCAACTCAGCCAAGAAACCCCCAAAAAAGG
Seq C2 exon
CCAACGAGAAGCCCGAGTCAGCACAGCAGGTGGCTGTTTCACGGCTCAGCGCCTCCAGCTCCAGCTCCGACTCCAGCAGCTCCAGTTCCAGCTCCTCGTCCTCGGACACCAGCGACTCGGATTCGGGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-'20-26,'20-22,21-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGAGGAGATTGAGATCG
R:
TTAACCCGAATCCGAGTCGCT
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]