MmuEX6077047 @ mm9
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34248965-34250426:-
Coord C1 exon
chr17:34250122-34250426
Coord A exon
chr17:34249801-34249923
Coord C2 exon
chr17:34248965-34249653
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCTGACTTTCCCCCTCCAGCTA
3' ss Score
9.45
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTACCTAAAAAGTCTCAAAAGACAGCTCCACCTGTCCTTCCCACTGGCTATGATTCTGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTATGATGAGAAGAGACAGTTAAGCCTGGATATCAATAAGTTACCTGGGGAAAAGCTGGGTCGAGTAGTACATATCATCCAAGCCAGGGAACCCTCTCTACGTGATTCAAATCCAGAAGAAATTGAGATTGATTTTGAAACACTCAAGCCGTCCACACTTAGAGAGCTTGAGCGATATGTTTTATCCTGCCTTCGAAAGAAACCCCGGAAGCCCTACA
Seq A exon
CTATTAGGAAACCTGTGGGAAAAACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAGCTAGAGAAGCGGTTGCAGGATGTCAGTGGACAGCTCAACTCCACCAAAAAGCCTCCCAAGAAAG
Seq C2 exon
CGAGTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGTCCCGTCTCAGTGCTTCTAGTTCCAGCTCAGATTCCAGCTCCTCGTCGTCATCTTCCTCTTCTTCAGACACCAGCGATTCAGACTCGGGCTAAGGGGCCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTGAACCACCCTTCCCCACTTTCCCTTGCTGTGACGCTTCTTCATCTCACCCCTCCATAGGAGAGCTGGCTCTGCAGTGGGGAGGAAGGCAGGGACATGGACAAAATACGATTGAATTCCTAGCCCTCTTGGGTGTGGTGTCCCTGTTGAGGATGATGGGGGTGGGGCAAGGGTATGGGTGGGAGTGGGGATAGGCCTGGCATAAAGCCCCCTGAGCTGTAGCTGTCCTGTTCACTTCTAAGGGCCCTGTTTTGAGGTTTTAATTTATTTAAGCTATGTGGTAAGGCTGGGGGTGTGTAGCCGTGGTCCTCCCTCCAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=PD(13.1=40.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAACCCCGGAAGCCCTA
R:
TGAAGAAGCGTCACAGCAAGG
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: