GgaEX6014591 @ galGal3
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:72250-73268:-
Coord C1 exon
chr16:72964-73268
Coord A exon
chr16:72758-72880
Coord C2 exon
chr16:72250-72684
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTGAACCTGAATTTCACAGCCA
3' ss Score
2.32
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATA
Seq A exon
CCATGAAGAAGCCGGTGGGGAAGACGAAAGAAGAACTGGCGCTGGAGAAGAAGCGGGAGCTGGAGAAGCGGCTGCAGGACGTCAGCGGGCAGCTCAACTCAGCCAAGAAACCCCCAAAAAAGG
Seq C2 exon
CCAACGAGAAGCCCGAGTCAGCACAGCAGGTGGCTGTTTCACGGCTCAGCGCCTCCAGCTCCAGCTCCGACTCCAGCAGCTCCAGTTCCAGCTCCTCGTCCTCGGACACCAGCGACTCGGATTCGGGTTAAACCCCACAGCACCACATGGGGCAGCATCCCGAGCGGCTCTGCGGGACCGGGCCGGCGTGGAGCAGACTGAGAGCCCCCCAGCAGCCCAGAGGACGCCCCATGGACTCAGCTGGGGGTCCCGGTGTGACCGGAGGCCCTCGAGCATCCCCAGGGCAGTGTGGGGCTGTGGGGTCGGACAAGGGGGGGTCGGCGGTGCCCCCCAGCAGGTTTTACTGTTTGTTGTGTTAGGGTTGGCTTTTTTTTTTTTTTTTCCTCCTGACTCGTGGGATTTTTTCCAAAAAAAAAAAAAAAAAAGGGGGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-'21-24,'21-22,23-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGAGGAGATTGAGATCG
R:
TGTGGTGCTGTGGGGTTTAAC
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]