BtaEX6096790 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7246314-7247225:+
Coord C1 exon
chr23:7246314-7246618
Coord A exon
chr23:7246853-7246975
Coord C2 exon
chr23:7247089-7247225
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTTTTCTTCTCTAGCTA
3' ss Score
9.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTGCTGGCTACGACTCAGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGTTGAGCCTGGACATCAACAAGTTGCCCGGGGAGAAACTGGGTCGCGTTGTGCACATAATCCAAGCCAGGGAGCCCTCTTTACGTGACTCAAACCCAGAAGAAATTGAGATAGATTTTGAAACACTCAAGCCGTCCACACTTAGAGAGCTTGAACGTTACGTTCTTTCCTGCCTGCGAAAGAAACCTCGGAAGCCGTATA
Seq A exon
CTATTAAAAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTAGAAAAGCGGTTACAAGATGTTAGTGGGCAGCTCAATTCTACCAAAAAGCCCCCCAAGAAAG
Seq C2 exon
CGAGTGAGAAAACAGAGACATCCTCAGCACAGCAGGTAGCGGTGTCCCGCCTCAGCGCTTCCAGCTCCAGCTCGGATTCCAGCTCCTCCTCTTCATCTTCCTCCTCTTCAGACACCAGTGATTCAGACTCAGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074-'18-22,'18-20,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=PD(13.0=40.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGTTGTGCACATAATCCA
R:
AAGAGGAGGAGCTGGAATCCG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]