HsaEX6063825 @ hg19
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:1104]
Coordinates
chr9:136897963-136901446:-
Coord C1 exon
chr9:136901154-136901446
Coord A exon
chr9:136899823-136899951
Coord C2 exon
chr9:136897963-136898827
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCCATTTGTTCCCCGACAGCAG
3' ss Score
6.66
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
ACAGCTGAAGAAAGGCGGCAAGCAGGCATCTGCCTCCTACGACTCAGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAAAAGCGCCAGCTTAGCCTGGACATCAACCGGCTGCCCGGGGAGAAGCTGGGCCGGGTAGTGCACATCATCCAATCTCGGGAGCCCTCGCTCAGGGACTCCAACCCCGACGAGATAGAAATTGACTTTGAGACTCTGAAACCCACCACTTTGCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAACCGTTCT
Seq A exon
CAGCAAGCGGGAAGAAACAGGCAGCCAAGTCGAAAGAGGAGCTAGCTCAGGAAAAGAAGAAGGAGCTGGAAAAGCGTCTGCAGGATGTCAGCGGGCAGCTGAGCAGCAGCAAGAAGCCCGCCCGGAAAG
Seq C2 exon
AGAAGCCCGGCTCAGCACCCTCAGGGGGCCCGTCCAGGCTCAGCAGCAGCAGCTCCTCCGAGTCTGGGAGCAGCAGCTCCAGCGGGTCCAGCTCTGACAGCAGTGACTCAGAATGAACTGGCTTCGGACAGAACAGGACAGATGGATGTCGCACACGCCGAGACTCTGCCGTACCCCTCTGTGGTTCATATTACTACTTCTGTTCCATGGTGTGCAGGTCTGCTTCTTAATTCAGTGTTATGATATCTTCCAGTTTTTGCTTTCATAGGTCAGAGATCTATCTTGTGTGTGCGTTAGACTTGATGAGAAGGTGTGAACTCTGCAGAAAGTCTCTTCTTCATCACTGAATTCAGTCACTTGGAGATGACAACTTCAAATGCTAACCCGATGACCCCAGAAAACCGTGTGAGATTCGTACCGAAGAACCTTGTGGAATCCCTTTGCTTAGGCCCAACCTGGTCGATAGCTCGAGAAAGAATTTTTTCCAAGGAAATGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925-'19-19,'19-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
A:
PF084185=Pol_alpha_B_N=FE(37.4=100)
C2:
PF084185=Pol_alpha_B_N=PD(32.2=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAACCCCGACGAGATA
R:
CTGTCCTGTTCTGTCCGAAGC
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)