DmeEX6001241 @ dm6
Exon Skipping
Gene
FBgn0004656 | fs(1)h
Description
The gene female sterile (1) homeotic is referred to in FlyBase by the symbol Dmelfs(1)h (CG2252, FBgn0004656). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (5 unique). Gene sequence location is X:8037808..8061436. Its molecular function is unknown. It is involved in the biological process described with: terminal region determination; dendrite morphogenesis; positive regulation of transcription elongation from RNA polymerase II promoter; negative regulation of transcription, DNA-templated. 69 alleles are reported. The phenotypes of these alleles manifest in: dendrite; metathoracic segment; embryonic/larval cuticle; embryonic/larval spiracle; egg. The phenotypic classes of alleles include: phenotype; increased mortality; some die during P-stage; increased mortality during development. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chrX:8050152-8051529:-
Coord C1 exon
chrX:8051359-8051529
Coord A exon
chrX:8050437-8050556
Coord C2 exon
chrX:8050152-8050283
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCATTTTTCCATCTCGCAGATA
3' ss Score
10.04
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGGACAAGCTGGGCCGTGTGGTTCACATTATCCAGAATCGGGAGCCATCGCTGCGTGACTCCAATCCCGATGAAATAGAGATCGACTTCGAGACGCTGAAGCCGTCGACGCTGCGCGAGCTAGAAAGCTATGTGGCGTCGTGTTTGCGCAAAAAAACACGTAAGCCATATT
Seq A exon
ATAAAAAGCCTTCTGGCAAGTCGAAGGACGAGCAGATGGCCGAGAAAAAGCAGGAACTGGAGAAGCGCCTGCAGGACGTCACCGGCCAACTGGGGGCAAGCAAGAAAACCGCCAAGAAAG
Seq C2 exon
ATGAGTCCGCTTCGAGCAAGGTCGAGGCAGTGCAGCCGGCGAATCCCGTGTCGTCGAGTTCCAGTTCCAGCGATTCATCGTCGTCGAGTTCGAGTGATAGCAGTTCGAGTGACTCGAGCGACAGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0004656-'20-13,'20-12,21-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0305501

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0071073, FBpp0071074, FBpp0089297, FBpp0089298, FBpp0089299, FBpp0290524, FBpp0305499, FBpp0305500
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACTCCAATCCCGATGAA
R:
CTTCACTGTCGCTCGAGTCAC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)