GgaEX1011193 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7159211-7162887:-
Coord C1 exon
chr17:7162595-7162887
Coord A exon
chr17:7160621-7160749
Coord C2 exon
chr17:7159211-7159804
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTCCTCTTCCACAGCTG
3' ss Score
10.3
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCAGCCCAAGAAAGGAGGAAAACAGGCATCTGCAACCTATGATTCGGATGAGGAGGAGGAAGGCCTGCCCATGACCTATGATGAGAAACGGCAGCTCAGCTTGGACATCAACCGCTTGCCTGGGGAGAAGCTGGGCCGAGTGGTGCACATCATCCAGTCACGGGAACCTTCCCTCAGGGACTCCAATCCTGATGAGATAGAAATAGATTTTGAAACCTTGAAGCCCACAACGTTGCGAGAACTGGAGAGATACGTGAAATCTTGTTTACAGAAAAAGCAAAGGAAACCATTTT
Seq A exon
CTGCAAGTGGAAAAAAGCAAGCAGCAAAGTCTAAAGAGGAGTTAGCTCAGGAAAAGAAGAAAGAACTAGAAAAACGGCTACAGGATGTCAGTGGGCAGTTAAACAACAACAAGAAACCTGCAAAGAAAG
Seq C2 exon
AAATCTGGCTCTGCTCCCTCTGGGGGCCCTTCCCGGCTCAGCAGCAGCAGCTCCTCCGAGTCGGGCAGCAGCAGCTCCAGCGGCTCCAGCTCAGACAGCAGCGATTCAGAATGAGCTACGGACACTTACACGAAACACAGAATGGACATCACCCTCACCGATGCTCTGCAGTGTCCCTTTCTCTCCTTAAAGTACTGCTCTTGTTCCATGGTGGTCAGGTGTTTGTTTGTTTTTCTTCCTCTCTGACTTTTTTTTTTGTTTGTTTTTTTAATCCAGTGTTATAAAACGTATCTTCCATTTTTCAGGCGCGTTCTTTTTATGAATAGGTCGAAGATCTTTGCATGTGTGTGACTAGACTTTATGGCAAACAGTTCCCTTTGCGTAAAGTCTCTAAAATACATTTTTACTGAAGAAATTTGGTTGAAAATGGAAGAACTTGGAACTCTTTGCAGGAGATAACTAGTAGGTTTCTGCAGAGTTTGTAGTACGTCTCCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
A:
PF084185=Pol_alpha_B_N=FE(37.4=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTGAAGCCCACAACGTT
R:
ATCGGTGAGGGTGATGTCCAT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]