RnoEX6016106 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5997315-6000133:-
Coord C1 exon
chr3:5999841-6000133
Coord A exon
chr3:5998810-5998935
Coord C2 exon
chr3:5997315-5998186
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCACTTACTCCACAGCAA
3' ss Score
9.04
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ACAGCTCAAGAAGGGCGGCAAGCAGGCATCTGCATCCTATGACTCGGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAGAAGCGGCAACTCAGCCTCGACATCAACCGGCTGCCTGGCGAGAAGCTAGGTCGTGTGGTGCACATCATTCAGTCCCGGGAGCCTTCCCTTCGGGACTCGAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACACTTCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCATTGT
Seq A exon
CAACAAGCGGGAAGAAGCAGGCAGCCAAATCGAAAGAGGAGCTAGCTCAGGAGAAGAAAAAGGAGCTGGAGAAGCGGCTACAGGATGTCAGCGGACAACTGAACAGCAAGAAACCCACTAAGAAAG
Seq C2 exon
AGAAGTCCGGCTCAGCTCCCTCAGGAGGCCCATCAAGGCTCAGCAGTAGCAGCTCCTCCGAGTCTGCGAGTAGCAGCTCCAGTGGGTCAAGCTCTGACAGCAGTGACTCAGAGTGAAGTTGGACTGGAACAGAGCTGGACAAATGGACGTGGCGCACGCCGACTGCAGTGTCCCCTCCTATGGTTAATATACTTTCGTTCCATGGTGTGCAGGTTTTCTTTTACTTCAGTGTTATGATCTCTTCCAGCTGTGCTCCAGTAGGGCGGAGAGCCTCGCACATGCGTGCACCAGACCCCACAAGAGGGCCGAGCTCTGCAGGGATCCCTGCAGCTCGGGTTTAGTTGTGTGGAGACTGCGCCTGGGATGCTAACCTGATGGCCATAGACAGGGTGGGCTGGAGGCGGGGCTGGACCTGCCCAATCCCTCCTCAGGCCCAGCCTCTCTCCCTTCATAAATTGAAGGAAGCTTTTCAAGGGTATTTCTCTGGAATGGGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-'36-24,'36-22,38-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000084491fB2073
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTCAGCCTCGACATCAA
R:
GCTACTGCTGAGCCTTGATGG
Band lengths:
253-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]