HsaEX6063825 @ hg38
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134030305-134036324:-
Coord C1 exon
chr9:134036032-134036324
Coord A exon
chr9:134034701-134034829
Coord C2 exon
chr9:134030305-134030816
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCCATTTGTTCCCCGACAGCAG
3' ss Score
6.66
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
ACAGCTGAAGAAAGGCGGCAAGCAGGCATCTGCCTCCTACGACTCAGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAAAAGCGCCAGCTTAGCCTGGACATCAACCGGCTGCCCGGGGAGAAGCTGGGCCGGGTAGTGCACATCATCCAATCTCGGGAGCCCTCGCTCAGGGACTCCAACCCCGACGAGATAGAAATTGACTTTGAGACTCTGAAACCCACCACTTTGCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAACCGTTCT
Seq A exon
CAGCAAGCGGGAAGAAACAGGCAGCCAAGTCGAAAGAGGAGCTAGCTCAGGAAAAGAAGAAGGAGCTGGAAAAGCGTCTGCAGGATGTCAGCGGGCAGCTGAGCAGCAGCAAGAAGCCCGCCCGGAAAG
Seq C2 exon
GCTTCGGGCGTGAACTGAACTCCAGACCCCTCTTTGTGTTGGGCAGTGTCATCTTGCTTACAAACTGTAAGACACATTTTTTTGTGTGTTTGTTTTTGTTGTTGTTCTTTTGCAGCACTCACGCCTCTGACAGTCTTTTGGGAAAGAGTAACACCCACATACAGAATTTGTCACATCCAGAGTAGCACTGTTCCTTAATACTGGCATAATGCTTCCAGGAAGTTTTTCTTTTTTATATTTAAAATGTTACTTTTCTGTATGATGTGCATGCAAGTTTACCGTAACTTTTCTTAAACTTTTTAGTGCCGTTTCTAGTATATTCCTGTAAATGTCAGTTACTGAAAATGAGTCCAATGTAAGTAGTTTAGCTTGTTTATTGCAATGCTGGCCTCAACACAACAGAATAAAAATGGTAGAAAGTACTCTTTGATGTTTCTGGTAATCATGGACCCTTCTCCTGGGGCATTTGTTTTGTTTTCATAATAAAAAGCAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925_MULTIEX1-4/5=3-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
A:
PF084185=Pol_alpha_B_N=FE(37.4=100)
C2:
PF084185=Pol_alpha_B_N=PD(32.2=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAACCCCGACGAGATA
R:
AAGACTGTCAGAGGCGTGAGT
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains