DreALTA0006226-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63732897-63739688:-
Coord C1 exon
chr5:63739399-63739688
Coord A exon
chr5:63732998-63733000
Coord C2 exon
chr5:63732897-63732997
Length
3 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
TTCTTCTTCCCTGTCGCCAGCAG
3' ss Score
5.9
Exon sequences
Seq C1 exon
GCAAGCGAAAAAGGGTGGCAAACCTGGTGCAGCAAACTACGAGTCTGACGAGGAAGAGTCTCTTCCCATGTCTTACGACGAGAAGCGGCAGCTCAGCCTGGATATCAACCGATTGCCGGGTGAGAAACTGGGCCGCGTGGTCCACATCATCCAATCACGCGAGCCCTCGCTGCGAGACTCCAACCCAGACGAGATCGAGATCGACTTCGAAACACTCAAGCCTTCCACGCTGCGCGAGCTGGAGCGATACGTCAAGTCCTGTTTACAGAAAAAGCAGCGCAAACCTTTAC
Seq A exon
CAG
Seq C2 exon
AGAAGGCGGGGTCAGCGCAGGGGGGCGGGGCATCCCGGTTGAGCGGCAGCAGCAGCTCTTCGGATTCGGGCAGCAGCAGCTCCAGCGGCTCCAGCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129-22-17,22-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF122803=BSMAP=PD(43.5=48.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAAAGCAGCGCAAACC
R:
CCGAATCCGAAGAGCTGCTG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]