BtaALTA0004603-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104875085-104877300:-
Coord C1 exon
chr11:104877086-104877300
Coord A exon
NA
Coord C2 exon
chr11:104875085-104875453
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGTCTCCACTGTCACAGAAGAAG
3' ss Score
-2.95
Exon sequences
Seq C1 exon
GCTCGCAGCAGGTGGCGGCCGTGTCCTCCGTGTGCCCGGCGACCCCCTTCCAGAGCGTCCCCCCCACGGTCTCCCAGACGCCCGTCATCGCCGCCACCCCCGTGCCAACCATCACCGCAAACGCCACGCCGGTCCCTGTCCCCCCGGCCGCCGCCCCGCCTCCCCCTGCCACGCCCATCATCCCCGTGGTCCCTCCCACGCCGCCTGTCGTAAAG
Seq A exon
NA
Seq C2 exon
AAGGGCGTGAAGCGGAAAGCAGATACCACCACGCCCACGACGTCCGCCATCACGGCCAGCCGCAGCGAGTCGCCCCCGCCGCTCTCGGACCCCAAGCAGGCCAAGGTGGTGGCGCGGCGGGAGAGCGGGGGCCGCCCCATCAAGCCGCCCAAGAAGGACCTGGAGGACGGTGAGGTGCCGCAGCACGCGGGCAAGAAGGGCCGGCTCTCTGAGCACCTGCGCCACTGCGACAGCATCCTCAAGGAAATGCTCTCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCGGTGGACGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTGAGCACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-4-6,4-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.758
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCCCCGTGGTCCCTC
R:
GTGATGGCGGACGTCGTG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development