DreALTA0006224-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63757820-63763247:-
Coord C1 exon
chr5:63763069-63763247
Coord A exon
NA
Coord C2 exon
chr5:63757820-63758188
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TATGTCATTGTCCTCAGAAGAAA
3' ss Score
0.91
Exon sequences
Seq C1 exon
AAAACCAGCAATCGATAGCCTTGACTCCTGGATCTCCATCGTCGTCATGTCCGAGCTCTCCTCCTCAGCTGGCTCAGACTCCTGTAATCGCTGCCACTCCAGTCGCCACCATCACAACCAATGTCCAAGCTGCGCCCCCTGCCACGGCCATGATCCCAACCGCACAGCCTGTGGTCAAA
Seq A exon
NA
Seq C2 exon
AAAGGGGTGAAGCGGAAAGCAGACACGACCACACCGACAACCTGCGCGATCACTGCCAGCCGAAGTGAGTCGCCTACTGCAATGTTGGAGTCCAAACACAGTAAAGTCATTTCCAGACGAGAGAGCACAGGTCGACCCATTAAACCTCCCAAGAAGGACCTGGAGGACGGGGACGTCCAGCAGCCAGGCAACAAGAAAAGCAAGCTCAACGATCATCTCAAATACTGTGACACTATCCTCAAAGAGATGCTTTCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAACCTGTAGACGCGGAGGCCCTGGAGCTGCACGACTATCATGAAATCATCAAGCAACCGATGGACCTCAGCACTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129-11-6,11-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCAATGTCCAAGCTGC
R:
GTGTGGTCGTGTCTGCTTTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]