BtaALTA0004719-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000030166 | BTBD17
Description
Bos taurus BTB (POZ) domain containing 17 (BTBD17), mRNA. [Source:RefSeq mRNA;Acc:NM_001205464]
Coordinates
chr19:57719488-57721468:+
Coord C1 exon
chr19:57719488-57719764
Coord A exon
NA
Coord C2 exon
chr19:57721368-57721468
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTCTGTACCTCTCTGGCAGGTA
3' ss Score
10.2
Exon sequences
Seq C1 exon
CCCAGAAAGCTGATGTTGGCGGGGAGTCAGCAGGCACCTCCATCAACCACTCCCAGATGCTGCTCCAGCGCCTGCAGGAACTGCTGCGGCAGGGCAATGCCAGTGATGTGGTGTTGCGGGTGCAGGCCATGGGCACCGACGAGGTCCGAGTCTTCCATGCCCACCGCCTGCTGCTGGGACTGCAGAGTGAGCAGTTCCGGGAGCTGCTGAGTAACCAGAGCGAGGTGGTCTTGCAGGAGTCCCGGGACTGTGCTGCCGTCTTCGACAAGTTCATCAG
Seq A exon
NA
Seq C2 exon
GTACCTCTACTGCGGAGAGCTGACCGTGCTGCTGGCACAGGCCATCCCCCTGCACCAGCTGGCCACCAAGTACCGCGTGGCCTCCTTGCAGCGGGGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030166-1-3,1-2,1-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGCTGATGTTGGCGGG
R:
AGCTCTCCGCAGTAGAGGTAC
Band lengths:
295-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development