GgaALTA1006244-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000023359 | BTBD17
Description
BTB (POZ) domain containing 17 [Source:HGNC Symbol;Acc:HGNC:33758]
Coordinates
chr18:9404032-9404972:-
Coord C1 exon
chr18:9404696-9404972
Coord A exon
chr18:9404133-9404381
Coord C2 exon
chr18:9404032-9404132
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CACCCCACCCTCCACCCCAGGTA
3' ss Score
7.12
Exon sequences
Seq C1 exon
CCCAGAAAGCTGACCTGGGCGGCGATGCCACTGCGGCCACCATCAACCACTCACTGACGCTGCTGCAGAGGCTGCAGGAGCTGCTGCAGAACGGCAACAGCAGCGACTCGGTGCTGCGGGTGCGCACGGCTGCCTCCGATGAGGCCAAGGTCTTCCACACCCATCAGCTGCTGCTCAGCCTCCAGAGTGAGGTCTTCGAGGGGCTCCTGCGCAACCAGAGTGTTGTCACCCTGCATGAGCCGCCCGAAACTGCCGCGCTCTTTGAGAAGTTCATCAG
Seq A exon
GTACCTGTACTGTGGGGGGGTGTCTCTCCTGCTGCACCAAGCCATCCCCCTGCACCAGCTGGCCAGCAAGTACCGGGTGTGGGGACTGCAGCGTGGCGTGGCCGACTACATGAGGAGCCACCTGGCCAGCGAGTCGAGCCAGGGCCACGTGGTGGGCTGGTACCACTATGCTGCACGCATCGGGGATGCAGCGCTGCAGGAGAGCTGCCTGCAGTTCCTGGCCTGGAACCTGTCGTCCGTGCTCGGCAG
Seq C2 exon
TGCCGAGTGGGCTTCGGTCAGCGTGGAGCTGCTGCTGCTGCTGCTGGAGCGCTCCGACCTGGTGCTGCACAGCGAGCTGGAGCTCTACACCGCCGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023359-1-7,1-6,1-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCACTCACTGACGCTG
R:
CTGTGCAGCACCAGGTCG
Band lengths:
308-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]