MmuALTA0002931-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000000202 | Btbd17
Description
BTB (POZ) domain containing 17 [Source:MGI Symbol;Acc:MGI:1919264]
Coordinates
chr11:114653736-114655440:-
Coord C1 exon
chr11:114655164-114655440
Coord A exon
NA
Coord C2 exon
chr11:114653736-114653836
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CCTCTCCAATTCCCTTCCAGGTA
3' ss Score
11.47
Exon sequences
Seq C1 exon
CTCAGAGAGCCGATGTGGGTGGGGAGGCAGCAGGCACCGCCATCAACCACTCCCACATGCTGCTCCAGCGACTGCAGGACCTGCTGCGCCAGGGCAATGCCAGTGATGTCATCCTGCGGGTCCAGGCTGTGGGCACCGACGAGGTCCGAGCCTTCCACACCCATCGCCTGTTGCTGGGGCTGCACAGTGAGCTGTTCCGGGAGCTGCTGAGCAACCAGAGTGAGGTTATGCTGCGGGAGTCCCGGGACTGTGCTGCTGTCTTTGACAAGTTCATCAG
Seq A exon
NA
Seq C2 exon
GTATTTGTACTGTGGTGAGCTGACTGTACTGCTGGCCCAGGCTATCCCGCTGCACAGGCTGGCCACCAAGTACCGAGTAGCATCCTTGCAGCGAGGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000202-1-4,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGTGCTGCTGTCTTTGA
R:
TACTCGGTACTTGGTGGCCAG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: