BtaALTA0005256-4/5 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285998-106286380:-
Coord C1 exon
chr11:106286204-106286380
Coord A exon
chr11:106286033-106286134
Coord C2 exon
chr11:106285998-106286032
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TCACACAGCCTGCTCCCCAGTTC
3' ss Score
1.89
Exon sequences
Seq C1 exon
CTGCCCTGCGGGTCCCCTCGCCCTGTCGCCGCCATCGCCATGCTGACCCCCAGGATTGCAGCCCTCTTGACTCTGCTTCTGGCCAGCAGCTCCCTGGGTCAGCGGGTGCGGAGACCCCCGCGGCCCCCATCCCCTATCAGCACCATCCAGCCCAAGGCCAACTTTGACGCCCAGCAG
Seq A exon
TTCTCAGGGACCTGGCTCCTGGTGGCCGTGGCCTCCCCATGTCGCTACCTGCAGGAGCAGGGCCATCGGGCTGAGGCCACCACTCTGCACGTGGCTCCTCAG
Seq C2 exon
GGCTCAGCCATGGTTGTCAGCACCTTCCGAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520-2-4,2-3,2-2,2-1,2-0-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(40.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGCCATGCTGACCC
R:
TTTCGGAAGGTGCTGACAACC
Band lengths:
178-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development