BtaINT0029629 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285998-106286380:-
Coord C1 exon
chr11:106286204-106286380
Coord A exon
chr11:106286135-106286203
Coord C2 exon
chr11:106285998-106286134
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TCACACAGCCTGCTCCCCAGTTC
3' ss Score
1.89
Exon sequences
Seq C1 exon
CTGCCCTGCGGGTCCCCTCGCCCTGTCGCCGCCATCGCCATGCTGACCCCCAGGATTGCAGCCCTCTTGACTCTGCTTCTGGCCAGCAGCTCCCTGGGTCAGCGGGTGCGGAGACCCCCGCGGCCCCCATCCCCTATCAGCACCATCCAGCCCAAGGCCAACTTTGACGCCCAGCAG
Seq A exon
GTAGAGCCGGGACGAGGTGGGGCAGGGGCCCACCCGGCTCTGCCGCCCCTCACACAGCCTGCTCCCCAG
Seq C2 exon
TTCTCAGGGACCTGGCTCCTGGTGGCCGTGGCCTCCCCATGTCGCTACCTGCAGGAGCAGGGCCATCGGGCTGAGGCCACCACTCTGCACGTGGCTCCTCAGGGCTCAGCCATGGTTGTCAGCACCTTCCGAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520:ENSBTAT00000056838:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(40.7=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTATCAGCACCATCCAG
R:
TTTCGGAAGGTGCTGACAACC
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development