RnoINT0027498 @ rn6
Intron Retention
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2725784-2727616:-
Coord C1 exon
chr3:2727425-2727616
Coord A exon
chr3:2725921-2727424
Coord C2 exon
chr3:2725784-2725920
Length
1504 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
CCCTCATACTCAACTTTCAGTTT
3' ss Score
8.37
Exon sequences
Seq C1 exon
CCCAACACTTCTTGAAGCACCCAGACGGTAATGTTGCACCACCTCACATTCTCCAGGGGCGCCAGACAGCAAGCACCTGAGTACTACTAGGCCAGATACAACCTGCAAGGTGGGGGTGCAGCCCCATCTTTATACCTTTCAGGTGGGGGGCCTTTGACACCTTCCCTAATGCTCCAGGGCCCAGAGAGACAT
Seq A exon
GTGAGCACCAAGGCAGGCAAACAGGTCTGGGCTGCCCAAACTGGCAGGTCCAAGTTTTAGCACCTCACCCTGTCTTTGACCTTGCTGCCACAGGACTTCAGGTCAGGGCTAACTTTCTTCTGAGAAGGGGCTCCTGCTGCCCAATGGCTGTCGTGTGGCTTCAGGAGAGAGCCTAGCCAGGAGGGTGGTAAGAGTGAGTGAGGTTTATGAATGTCGCGAGCAGACAGCAGGGACCACGCCGCTTAGCTAGACGGGGCAGCATCTCCTTCAGTGACCTACTGAACACCGTGGGTGAACTAGGACGACGTCAACCTACCAAGGCTATCACTGGCCAGATAAAGCCACCAAAGGCTGTACAAGTGTAGACATTGCAGGAGAAAAGACGGTGACAGTGAACAAAGCCCGTGAAGGTAGCAAAGGCCAGTTAAAGTAGGACAAGGCAGGGCGAGGCCCACGACCGGGACCAGGCCCGAGAAAATAAACGAAGGCCAGGACCGGGGACGAGGGACACCGAAAGTGGCAAAAGGCTGGTGACCGCAGGACTGGGAGTAATGGGGCACAAGGCCGGTGACTGGGGACAGGGCAGATGACACAGGTGAGCACGGCGGGGCCAAAGCCGGGACTCACCGCGGTGCCTCTGCCCGCTGCGCTGCGCCCGGCTTCCGCCGCCGCTCTAGTCCCCGCCTCCGAGTCTTTATAGAGGAGCCAGACTCGACGCCCAGAGCCCCGAGGCATCGATGGTTCCCTCTCTTGCGCCTGCGCCTCAGGCTCTGACTCTCGGCCTGCGTCTCTCTCTGCGCCTGCGTGCGCTCTTACTTTCTGGCTCGAGGAACAGTACTCGCTCCTGGGTACCCGAAAGGACGGCTGTAATGAGCCAGGCTCAGCTGGGCGGGTTTGGGACTCTGCCCTTGCTCTCTCTGCTGCTAAGCTTTGAACAAATGGCTTTTTATGAGCATGTTGTTCGTTGTGGATTTAAAGACAGTTATTGCGTGCAAAGGGTTGAGCACTGACCTCAAGTGGAAATAGGGGTGCAGAGGACAACTCTAACTTTGCACTTGGGACACAATGCCAAGCTCCTGTCAAGGCTAGGTTCTAGGGTGGACCCTGGCTTGGGTTGGGGGTTCAATAATCGGAAGACAGATGTGGACTTCTGGACTGTGCTTCCTGTGGCACTGGACAGTGGACTCTGACCTAGAACAGTGCACCCCTCCACCTCCCTGTCCTATCACCTACTGTCACAGAACGGCCATGCTGTCCCCCGGGGCTGTTTTATTCTTCACCCTGATCTTGATGGCCAGTTCGCTGGGCCAAAGGACTCGAAAACCTTATGGGTCTACATCCCCCATCAGCACCATCCAGGCCCAGGCCAATTTCAATGCTCAGCAGGTAAAAGCTGGAAGTGAGTTGGGGTAGGTAAAGGAGCAGCAAGAACTTGCCTAGCTTGACAGAATTGGTCCAGGGTTTCCCATTCCCTCAGCTCTGACCCCTCATACTCAACTTTCAG
Seq C2 exon
TTTGCAGGGACATGGCTCCTTGTGGCTGTGGGCTCTGCATGCCGCTTTCTTCAGGAGCAGGGACACCGGGCTGAGGCCACTACATTGCACATAGCTCCCCAGGGTGCAGCTATGGCTGCCAGCACCTTCCGAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701:ENSRNOT00000061904:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(31.7=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACTTCTTGAAGCACCCA
R:
CTTTCGGAAGGTGCTGGCAG
Band lengths:
326-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]