GgaINT1007994 @ galGal4
Intron Retention
Gene
ENSGALG00000024004 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr17:515146-515964:-
Coord C1 exon
chr17:515846-515964
Coord A exon
chr17:515286-515845
Coord C2 exon
chr17:515146-515285
Length
560 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCCATCTGGTGCTGTGCAGCTG
3' ss Score
6.68
Exon sequences
Seq C1 exon
CGCCCTCCTGCTCCTCTCCCTGCTTCCTCGCCGCGCCGCAGGGACGGGGACAGCGGCCGCCCCCTCCCCACAGCCCTCTTGAGAAAGTGGTGACCGAGGGGAACCTCAGCCTCGGCGAG
Seq A exon
GTGAGGCCAGGCGTCCCCCGCGGGCAGGGGGCACTGGGAGCAGCACCGGGGCTGCGGTGTGGCCCCTCGTGCTCCCTTTTCCGGTCCGGCCCCATAGCGTACCCCAGCCCACTCCTGGCCCTGCAGCGTGTCCCAGCCCGCTGCTCGTACAGCTCTGCCCCAGGCGCTGCCACCCAGGCCTCCGGGTGCCTGTAGAGCCCACCCATGGGGGTCTTGGGGCTCATGGGGAGTGTGAGGCTGTGCTGCAGGGGCCTAACTGGAGCTATGGGGTGGGGGCAGGTCTGCGGGGTGCTTGTCTGCCACATACGCAGGGCTATGTGCGGTTGCTGTGTGCCATGGGGCGATGTCCCGGGCTCCCCATTGTGCTGCTGCTCCTGAATGAGGGTCCACAGTGAGCAGCACCCCATGCACGGGGCCAGGCTGCGGGCAGCAGTGCTGAGCAAGAGGGGGCAGCGTGAAATGTGGGAATGGGTGCTCAGCACAGCGGGGTGACAGCAGCCCTGGGCAGGGGTGTCCCAGGGCCAGGGCCTGGGTGACGGTGCCCATCTGGTGCTGTGCAG
Seq C2 exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004:ENSGALT00000040479:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(32.6=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCTCCTCTCCCTG
R:
CTTCCTGAAGGTGCTGATGGC
Band lengths:
254-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]