BtaALTA0005520-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103451592-103453190:-
Coord C1 exon
chr11:103453088-103453190
Coord A exon
chr11:103451708-103451710
Coord C2 exon
chr11:103451592-103451707
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TGCCCCGTCCCCCTCCCCAGCAG
3' ss Score
8.15
Exon sequences
Seq C1 exon
CTGATAACCTGAGCCGGGCCCAGTCGGGCTCCAGCCTGTCGTTGGCCTCCGCAGCGACCACAGAGCCCGAGAGCGTGCATTCGGGGGGCACGCCTTCGCAGCG
Seq A exon
CAG
Seq C2 exon
AGTCGAGTCCCTGGAAGCCTTGCCCGTGCTGAGCCGCAACCCCAGCAGGAGCACCGACAGAGACTGGGAGACTGCCTCCGCCGCGTCCTCACTCGCCTCCGTGGCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008-27-22,27-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGTGCATTCGGGG
R:
GTCTCCCAGTCTCTGTCGGTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development