BtaINT0031077 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103451592-103453190:-
Coord C1 exon
chr11:103453088-103453190
Coord A exon
chr11:103451708-103453087
Coord C2 exon
chr11:103451592-103451707
Length
1380 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCCGTCCCCCTCCCCAGCAGAGT
3' ss Score
7.42
Exon sequences
Seq C1 exon
CTGATAACCTGAGCCGGGCCCAGTCGGGCTCCAGCCTGTCGTTGGCCTCCGCAGCGACCACAGAGCCCGAGAGCGTGCATTCGGGGGGCACGCCTTCGCAGCG
Seq A exon
GTGAGCAGGCGGGGTGCCGCGGGGGTGCTGTGCAGTGTGGGCGGCGGGCCGTCCGGCTGGCCCTGGGCAGCTCAGAGCTGCGGCAGTGCCGTCTCGGGAGCTAATCCCTGTGGCCCAGGCTCGCCCACTGCTGAGACGGTTTTGTGTTTGGCTTTCTCTGCCTCCCTGTTGTCCCAGCTCTGGACGCGTTTGTGTTTCTAGCCTTTTGAGAGTAGTAAGTTGACGACACCCTTTTTGTCCTTAAACACTTGAGAGCGTGTGTCTCTGAGCAGGGGCGTTGCCTCTCGTCACCGCGATCATAGACCAGCACTGCCATTGGGTCCGCAGTCCAGCTCGCCGTGGCCGTCCCCAGTGTCCTTCCGTGAGCCCAGGCCCACGTGGGGCACGGTCTCGCTGAGCGCTCGTGCTCGTTCCCTGGAACGGGCGCTCACCTCCTTGCGTCTCCCTGGGGCTGGACGCTCTGCCCAGGACAGGCCAGTTGCTTTGTGGCCTGGCCCTCGGCAGGTTTCCCCCGATCCAGTCCAGCCTGTGCGTTTCTGGCAGCAGCACCGTGGAGAGGGGTCTGTGCGTTTCCCACGGCAGCCTGTCGTGGTGTCACCTTGATGTGGGCTAAGGTGCTGTTTCCGTGGGCACTGGCTTTTCCCTTTGTGATTAAGGAGTGAATCAGGAGGAGGTGGTGTTGGGGAGCCTGTCGATGGCACTGACTGCCCACAGGCCTCAGCAGCCCCCGCGGGTCTCTGTCCACGCTGCCTCCACACTGGGGTTGGCCTCCTGGCAGGCAGGTCCCCGCTGTCCTGCCTTGCCGCACCTCTGGGGGCTTCTTGACGCCTCCTGTGGACCCTGGACTCTGGTTAGAACTTTGCTCAGACGGTCAGTTACCGGGACTGAATTCAGGCTTTTCCCACACCTGCCTCCTGGCACGAGTGTGTCCCCCTCAGTGGAGGTGGCCCAAGGGCCATGGCTGAGGCCGTAGGGGAGCAGAGAGGCCTGAGACCCCACTGGGCTTGGACTCCGCCCACCAGGCCCCTTCTTCCCCTGGTCCGTCCCTTGTCTGGGGGCAGCAGCAATGTCCGGGCCCTGGTCACCTGGTTCTCACATCAGCAGGACAGGCGCTACCCTCCCACTCCGCGGTGCCACCTGAGGGTGGCCCTCCCCGCCCAGGCCCCTTGGTGCCCTGGGCTGGGTTCTGTCCATGATGCCATGTTTTGCTGGGGCAGACTGGCCATACTCCCCGCTGCTGCCGCGGCCGACAGCCTTTCCTATGCTGGCGGTGCAGCCCCGCCCGTTGCAGGGTGGGGTCCCACCAGCCGGCACCAGTCTCGGGCGAGAAGAGGTGTGCCTGCCACCCTCCCATCCCTGCCCCGTCCCCCTCCCCAGCAG
Seq C2 exon
AGTCGAGTCCCTGGAAGCCTTGCCCGTGCTGAGCCGCAACCCCAGCAGGAGCACCGACAGAGACTGGGAGACTGCCTCCGCCGCGTCCTCACTCGCCTCCGTGGCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATAACCTGAGCCGGGCC
R:
CTGTGTACTCGGCCACGGAG
Band lengths:
219-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development