RnoINT0028764 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3381445-3382608:-
Coord C1 exon
chr3:3382506-3382608
Coord A exon
chr3:3381561-3382505
Coord C2 exon
chr3:3381445-3381560
Length
945 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TTGTCTTTTTCTGCCTGCAGAGT
3' ss Score
10.94
Exon sequences
Seq C1 exon
CAGATAACTTGAGCCAGACTCACTCTGGCTCTAGCCTGTCCTTGGCATCTGCAGCAACGACAGAACCTGAAAGTGTTCACTCGGGGGGCACACCTTCTCACCG
Seq A exon
GTAAGGAGGCCAGAAGCTATACGGTATCGTAGTGCACTTGTATAGAGAAGGGGACCTTCCCGACCAAAGCTGAAGGAGATACATTTTATAGCCAGTTCTGCAATGTTTAGGAGGAAGCCCAGCCTACCCTTACCAGGGCCCATTGGCTTCCGCGACATCCTCCTTCATTCTTTCCCCTTGATGCCCCTGTCAAATGTGTGCACTTCTTGTTGCATATGAATAAGTGGGTGACACTTAGCCTCACTGCCTGCATACTTCAGTGTGTCTCATTACATCATACTTGTCAAACCGCCATCTGGCACAGCCTTAAGTGTGAGTGCCTTTCTTGGTCTGTGGGTCAGGCAGGGACCAATCCTTTTGGGCTATTGGATCATTTAAAGTGGTGGTTTTCACTTTCTCCCAGCTGTTGAAACCCTCCTCTGTGTTACAAAGTAACTTCACGGTGCTGTGCCTGTGCTGGCACCAGGGAGCTTTTATGTAGGTGCTGTTGACCCCTTAGCTGGGCCCTCATCTGAACGGTGTCAGGTGCAGGATCGTGTGAGCGTCGTCTGTGGAGGGGCTTTCACTCCTCCTTGATGTCTGGTAGATTCTTTTCTCCTGGATTTTGTGGAGGACTCCTAAGGAACCTTGAATGGTGCTTTCTTTGGTTTTGTTTTGGGAGTTGGTTTTGCATCTAGAGTCTGCTCCATCCCTGTCAGCCTGCCTAGAGAGCATCAGCCAACCTCGTGCACAGTTTTCTCAGGCTTCGACCTTGGTACTTACTGTTCATGATCTGGCATCATCACTCCCTGCGCTCATGGAGACACCGTCTGGCAGTGGCTAACAGGCTCTCCAAGTCCTCTGCCTTCACAGGAAGGCCTGCTGCAGCAGTAGGCATCGTGCCCTGATGGTGTGGGTGGTCATGGAGAAGTGCAGCTTGAGCACCTTGTCTTTTTCTGCCTGCAG
Seq C2 exon
AGTTGAATCACTGGAAGCCTTACCTATCCTGAGTCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCGGCAGCTTCCTCTTTGGCCTCTGTGGCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTCACTCTGGCTCTAGC
R:
CTGTGTACTCGGCCACAGAGG
Band lengths:
205-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]