GgaINT0125781 @ galGal4
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8204237-8204806:+
Coord C1 exon
chr17:8204237-8204339
Coord A exon
chr17:8204340-8204690
Coord C2 exon
chr17:8204691-8204806
Length
351 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
TCTCTGTCCTTCCCCAACAGAGT
3' ss Score
10.76
Exon sequences
Seq C1 exon
CTGATAATTTGAGCAGTGCTCAGTCTGGTTCCAGTCTTTCTTTGGCCTCAGCAGCAACAACGGAACCTGAAAGTGTACACTCTGGTGGCACACCATCTCAGAG
Seq A exon
GTAGAGAGATTTAAAAATAAAGAAAGAAACGTTTATCTTACCTTACGAGAGTGTTAGGGTTCAGTGTTGTTTGCTTTGGTTTGCAAGAGTAGAGGCACAACAATAATTAGTGAAGTCATCTTCTGTTTTACTTGGGTGCCAAATTTGGTCTGTACAAAATTGAAATTTTATTTGTTTGGGAAAAAGAAAAACAATGGGAAGTTTGCCTCAGTAATCTGGTAGGAGGAGTCTGACAGTCCTGAGGAATAAGAGAGAGAGTAGTCTGTTTTTTCAGGGCTAGTGTCTTCCTAGTGAATTTGTTGAAGATTTGAAGGGAAAACAATGCTTATTTTCTCTGTCCTTCCCCAACAG
Seq C2 exon
AGTTGAATCTATGGAGTCATTACCAATCCTGAGCAGAAATCCTAGCAGAAACACAGAAAGAGACTGGGAGAACGCTTCAACTGCATCTTCTATTGCTTCAGTGGCAGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTCAGTCTGGTTCCAG
R:
CTGTGTATTCTGCCACTGAAGCA
Band lengths:
206-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]