DreINT0040919 @ danRer10
Intron Retention
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64938881-64939242:-
Coord C1 exon
chr5:64939140-64939242
Coord A exon
chr5:64939003-64939139
Coord C2 exon
chr5:64938881-64939002
Length
137 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TTGTTTGTTTCCATGAACAGAGG
3' ss Score
7.29
Exon sequences
Seq C1 exon
ATGAGAATCTCATCAGTGCCCAGTCTGGCTCTAGTCTATCACTGGCTTCTGTGGCCACCACTGAACCAGACAGTGTCAACTCAGGAGGGGCGGGATCTCAGCG
Seq A exon
GTAAGTCCTTCCGCATGTCCAACAGTGTGTGCAAATGCTTGCGTGCATTTCATTAATTTCTTTCAGAATCAATCGACTGTTCAGACTGTGACCTCCAAAGCACTTTAATGTTGCTGTTTGTTTGTTTCCATGAACAG
Seq C2 exon
AGGAGAATCAGTCGAGTCATTTCCAGGTCTCAGTCGCAATTCCAGTCGGACTACAGAGAGAGACTGGGACAACGGCTCCACCGCGTCTTCCATTACATCAACATCCATGGCGGAATACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122:ENSDART00000147707:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.916
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCAGTGCCCAGTCTGG
R:
CCGTGTATTCCGCCATGG
Band lengths:
218-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]