BtaALTA0005522-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81314458-81317403:+
Coord C1 exon
chr16:81314458-81314542
Coord A exon
chr16:81317321-81317368
Coord C2 exon
chr16:81317369-81317403
Length
48 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCGTGTCTTTTCTGTTGCAGTGG
3' ss Score
9.63
Exon sequences
Seq C1 exon
CTGAGCCTGTGGAGGATCTGCCATCACTTCCTGTCTCGAATGCTGCCCCCCAAGATGCCCTGGACAGCTCTGACCTCACGCCAGG
Seq A exon
TGGGGAAGGAGCTGCGTTCACACACTCTCGTCCCCATTTGCCTTCCAG
Seq C2 exon
GCACTTACAGCCCCAGCCTCATCCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-14-17,14-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTGGAGGATCTGCC
R:
TGAGGCTGAAGGATGAGGCTG
Band lengths:
116-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development