HsaALTA0001445-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000118200 | CAMSAP1L1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:29188]
Coordinates
chr1:200813910-200816420:+
Coord C1 exon
chr1:200813910-200813997
Coord A exon
chr1:200816338-200816385
Coord C2 exon
chr1:200816386-200816420
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
AAATTTATTTTCCATTGCAGTGG
3' ss Score
7.68
Exon sequences
Seq C1 exon
CTGAACCTGTAAAAGATATGCCTTCAATTCCTGTCTTGAATGCTGCCAAAAGAAATGTCTTAGATAGTAGTTCTGACTTCCCTTCAAG
Seq A exon
TGGGGAAGGAGCTACATTTACACAGTCTCATCATCATTTGCCTTCTAG
Seq C2 exon
GTATTCACGTCCCCAGGCTCATTCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118200-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGTAAAAGATATGCCTTCA
R:
CTGAAGAATGAGCCTGGGGAC
Band lengths:
116-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)