BtaALTA0005594-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37884092-37884495:+
Coord C1 exon
chr10:37884092-37884170
Coord A exon
NA
Coord C2 exon
chr10:37884379-37884495
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCCTGTGCTCTCCCCAACAGGCT
3' ss Score
11.41
Exon sequences
Seq C1 exon
AAAATTTTCAAACACTATGACACAGACCAATCTGGCACCATCAACAGCTACGAGATGCGCAATGCAGTCAAAGATGCAG
Seq A exon
NA
Seq C2 exon
GCTTCCACCTCAACAACCAGCTCTACGATATCATTACCATGCGCTATGCAGACAAGTACATGAATATTGACTTCGACAGTTTCATCTGCTGCTTTGTCAGGCTGGAGGGCATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-35-34,35-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(27.4=100)
A:
NA
C2:
PF134991=EF-hand_7=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATCTGGCACCATCAACA
R:
CATGCCCTCCAGCCTGACAAA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development