BtaALTA0005905-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004267 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:38004587-38091976:+
Coord C1 exon
chr2:38004587-38004806
Coord A exon
chr2:38091835-38091856
Coord C2 exon
chr2:38091857-38091976
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGGCATGGGTTGCTCCAGGAA
3' ss Score
5.09
Exon sequences
Seq C1 exon
GTGAGTGCTGATTGAAATTGGGACAGCTTTCGCTTTGTCTCCCTGTCAAACCCAGTTGTGCATGAAAGGGTTAGTCCGTCGCGTCAAAGGCAGGGACAGCTGAGCCCCTAAAGGAATCCTTGAGAACCTGGGAGTGGGCATTTCACTTTTTCTGCGATTAGGGAGTCCCTCGGCCTCTGCCCTTTGGCCTTTGACACGTGTGCACCTTCTGCTTCTCCAG
Seq A exon
GAATGATGTGTTTCTTGGCCAG
Seq C2 exon
GCCTTTGTCTGCAGCTGAGTCCAACCCTGGAGGAGGTGACAGCTAAGCATCAAGTGCTCTCTAGAAGTGGATGACACATCCCCATGTCCTCCAAAGGAGCTGTGTTGCTAAAGAGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004267-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGTGGGCATTTCACTT
R:
GTTGGACTCAGCTGCAGACAA
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development