BtaEX0007390 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004267 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:38004587-38109775:+
Coord C1 exon
chr2:38004587-38004806
Coord A exon
chr2:38092330-38092392
Coord C2 exon
chr2:38109693-38109775
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGTTTCCTTGACAGGTA
3' ss Score
11.83
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTGAGTGCTGATTGAAATTGGGACAGCTTTCGCTTTGTCTCCCTGTCAAACCCAGTTGTGCATGAAAGGGTTAGTCCGTCGCGTCAAAGGCAGGGACAGCTGAGCCCCTAAAGGAATCCTTGAGAACCTGGGAGTGGGCATTTCACTTTTTCTGCGATTAGGGAGTCCCTCGGCCTCTGCCCTTTGGCCTTTGACACGTGTGCACCTTCTGCTTCTCCAG
Seq A exon
GTATGGAAAACATGAATAAAAGAGACCAACTATTCATGACAATTCAGAAAAATGATAGCTCAG
Seq C2 exon
ATACAAAATGGAATCTGAAATAAAATCCTTATTCAGTGAAGAGAACATTGGAAATGAATGTCTTTCTGACCTTATGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004267_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0070316=Glyco_hydro_2=PU(13.1=77.8)
C2:
PF0070316=Glyco_hydro_2=PD(15.9=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGGAGTGGGCATTTC
R:
CCAATGTTCTCTTCACTGAATAAGGA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development