HsaEX0013068 @ hg19
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:25191]
Coordinates
chr2:159214961-159313265:-
Coord C1 exon
chr2:159312927-159313265
Coord A exon
chr2:159222526-159222588
Coord C2 exon
chr2:159214961-159215082
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCGTTTCCTTAACAGATA
3' ss Score
10.75
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATAGAGACCGATGCTGTTCAGCGCGAGAGGGCCTGGAGAGGGTGGGTGTGAGAGAGAAGGTGTCTCAGGTCTCGGGCGCGGGAGGGGGTGGCGGAGAGGACAGGGAGATTCCCCAGCGCTGGCTCTGAAATCTGGGGCAGGCTTTCCTTGCCTTACTGCCAATCCCAACTGTGCCTGGTAGGGTTTGTCCCTGGCGTCAAAGGTAGGAACAGCTGAGCCCTTAGATGTACCCCTGACGGCGAGAGCCCAGGAGTGGGCGTTTCACTTTTCCTGCGTTTGGGGAGTCCCTGAGGCTATGCCCTTTGACCTTTGACATGTGTGCAGCTTCTGCTTCTCCAG
Seq A exon
ATACGGAAAACATGAATCAAAGAGACCAACCATTCATGACAATTCAGAGAAATGATAGCTCAG
Seq C2 exon
ATAATCTGGTATTCCATATGAAAAATGAGATGAGAAACATCAAGTACAAACCAGTAGACTATCAACAATTGCGTGCATTAACTGAAGCAAAGAAATTGGCTTCTGCCTCTGCAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237_MULTIEX1-2/8=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.625 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF074186=PCEMA1=PU(17.3=82.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGCCCTTTGACCTTTGA
R:
TGCTTCAGTTAATGCACGCAA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)